Vol. 2The Hidden Root Network

Gen and Fugaku pursued evidence that Root manipulated records and access systems to frame the Uchiha and justify their relocation. The Hokage agreed to review Root’s assessment authorizations, while Gen warned Itachi that Root would hide its most revealing records.

  • Gen organized Uchiha safeguards and helped preserve evidence after Root burned the records room.
  • Fugaku and Gen traced irregular Nine-Tails records suggesting the Uchiha had been framed, but Fugaku withheld the conclusion until they could prove responsibility.
  • Gen, Itachi, and Shisui investigated Morikawa Kai’s testimony and found altered records, irregular Root procedures, and a dead logistics ninja’s identity used to obtain Root supplies.
  • Hiruzen ordered a review of retired, missing, and deceased personnel, and Anbu placed Ihara in protective custody.
  • Fugaku and Gen traced Root’s old surveillance and transfer systems while keeping the Masked Man inquiry separate from clan responsibility.
  • They linked Obito Uchiha’s incomplete death records to an old identification number and found that a classified handover sheet had been altered.
  • Fugaku and Gen uncovered falsified records and biased documents used to support the Uchiha Relocation Order, along with unauthorized assessments of Shisui and Itachi.
  • Hiruzen agreed to review Root’s assessment authorizations as Gen warned Itachi that Root would conceal its most revealing records.
Chapters 101–200 Read from ch. 101

Arc 5The Night of the Nine-Tails Trail

Uchiha Gen and the clan built safeguards against Root’s attacks, then used records and witnesses to challenge Root’s operations and investigate the Night of the Nine-Tails. The trail suggested someone had used old Military Police Force authorization to frame the Uchiha, but Fugaku withheld that inference until they could prove who was responsible.

  • Gen made himself part of the clan’s witness and protection system, distributed responsibilities among the Uchiha, and required records of his own movements.
  • After Root set fire to the records room, the Uchiha saved crucial files and established backups across the clan, the Konoha Military Police Force, and the Hokage Office.
  • Fugaku secured approval for a cross-district patrol pilot, and Gen, Shisui, Itachi, and Jun documented complaints and exposed a coordinated effort to provoke residents.
  • Fugaku submitted a risk assessment that pressed Hiruzen to demand Root’s peripheral personnel roster, and the Uchiha identified unexplained gaps tied to several incidents.
  • Shisui, Itachi, and Gen rescued a former Root liaison, then recovered charred Uchiha Final Disposition Plan documents and placed them under joint custody.
  • Gen and Fugaku pursued a border anomaly and requested access to Night of the Nine-Tails records, while the Hokage Building approved Uchiha participation in the investigation.
  • Itachi found that old Military Police Force patrol authorization had been borrowed near a sealing-related area before the Nine-Tails attack, but its receipt and identifying details were missing.
  • Gen, Itachi, and Che found matching formats, sealing-wax impurities, numbering conventions, and irregular access routes that suggested someone had laid suspicion on the Uchiha, but Fugaku withheld the inference pending proof.
Chapters 101–125 Summaries Read

Arc 6The Old Records Reopened

Gen and the Uchiha traced Morikawa Kai’s testimony about the masked man to altered Konoha records and irregular Root procedures. The review expanded to retired, missing, and deceased personnel as Ihara entered protective custody, while Gen warned that Danzo might destroy the remaining evidence.

  • Morikawa Kai’s message led Gen, Itachi, Shisui, and Crow to investigate the border, where they documented staged clues and found evidence of both spatial residue and possible Root trace-removal methods.
  • At a witnessed meeting, Morikawa Kai admitted giving border patrol routes to a masked man before the Night of the Nine-Tails and described an old Konoha access point tied to a numbered directive.
  • Crow presented the border evidence to Hiruzen Sarutobi and the council, and Hiruzen ordered a review of the old records despite Danzo’s objections.
  • Gen, Fugaku, and Itachi traced the access point to a replaced ledger page, a missing receipt signature, and a procedure record that Che and Aoi confirmed did not follow archival rules.
  • Che connected irregular sealing wax to Root supplies, and the officials discovered that a dead logistics ninja’s identity had been used to collect it.
  • The Archives Room intercepted a request filed under a nonexistent mission number, and Ihara, a retired Root clerical ninja, denied submitting it but recognized his supposedly destroyed seal.
  • Ihara testified that Root’s old seals, code names, and routines could remain usable after personnel left, prompting Hiruzen Sarutobi to approve a review of retired, missing, and deceased personnel records.
  • Anbu placed Ihara in protective custody and sealed the old seal destruction records, while Fugaku briefed the Uchiha core and Gen warned that Danzo might destroy the remaining evidence.
Chapters 126–150 Summaries Read

Arc 7The Unassigned Number

Fugaku and Gen traced Root’s old surveillance and transfer systems through sealed archives, while keeping the inquiry into the Masked Man separate from clan responsibility. The investigation linked Obito Uchiha’s incomplete death records to an old identification number and ended with evidence that a classified handover sheet had been altered.

  • Fugaku expanded the review from dead names and isolated witnesses to Root’s old fronts, uncovering pre-Nine-Tails surveillance of the Uchiha, including Sasuke’s home environment, and securing Hokage limits on monitoring minors.
  • Crow and Gen exposed an unmarked cart carrying empty envelopes and torn labels from the Core Sealed Archive, leading Hiruzen Sarutobi to suspend Root’s peripheral old shells and require witnessed, timestamped records for exceptions.
  • Danzo introduced intelligence about the Masked Man, but Fugaku insisted that lead proceed alongside the records review and that individual actions, outside manipulation, and clan responsibility remain distinct.
  • The Archives Room found gaps in Obito Uchiha’s death and keepsake records, including an identification number with no formal deactivation record, and Anbu linked the number to an old border informant.
  • Crow traced the number through wartime, postwar, and recent records and found it on a peripheral-contact summary from the day before the Night of the Nine-Tails, while Gen cautioned that the record did not establish who had used it.
  • Fugaku’s review of the number uncovered an unnamed temporary relay, and Crow found that a line covering its time slot had been added to a classified handover copy after the original was made.
  • Fugaku requested an investigation into everyone who handled the altered sheet, and Gen noticed that the archival assistant’s code name appeared beside the same old identification number.
Chapters 151–175 Summaries Read

Arc 8The Old-Shell Investigation

Fugaku and Gen traced the hidden legacy-access system through falsified records and biased documents used to support the Uchiha Relocation Order. The review exposed unauthorized assessments of Shisui and Itachi, and the Hokage agreed to examine Root’s authorization records as the investigation continued.

  • Shisui presented spatial-residue records, and Fugaku uncovered testimony that someone had ordered a barrier anomaly recorded as a temporary verification.
  • Fugaku and Gen traced a canceled Hokage Building pass through old access records to supplementary files concerning the Nine-Tails incident and the Uchiha Relocation Order.
  • Investigators found tampered evidence links and a missing sealing-wax ring, while Arai admitted that an anonymous sealed note had prompted him to rearrange archive records.
  • Fugaku secured witness protection and helped expose a temporary staffing network whose workers had accessed sensitive archives and records connected to the Relocation Order.
  • The review found that Hirakawa had accessed preliminary reports, and investigators discovered that Uchiha grievances and incidents had been counted and classified by different standards than comparable cases.
  • Fugaku and Gen uncovered risk documents that singled out Uchiha children, including Shisui and Itachi, and traced Shisui’s assessment to an unwitnessed proxy signature linked to the missing ring.
  • Hiruzen approved independent oversight of Shisui’s assessments and suspended later entries that relied on the proxy-signed assessment.
  • At the two-hundredth clan review, Fugaku requested scrutiny of Root’s assessment authorizations, and Hiruzen declared that the Hokage would review them as Gen warned Itachi that Root would conceal its most revealing records.
Chapters 176–200 Summaries Read
Volume 2 of 5