Arc 4Root Reborn
After the invasion, Naruto seized control of Root, exposed Danzo’s crimes, and reorganized the group while training new operatives. He arranged for Neji’s Curse Mark to be removed through a Daimyō’s Palace appointment, leaving his broader plan to reshape Konoha underway.
- Naruto exposed Danzo’s crimes and challenged Hiruzen, but Danzo used Kotoamatsukami to secure Hiruzen’s public endorsement as Fifth Hokage before Naruto wounded him and he escaped.
- Naruto and Kakashi pursued Danzo to Root’s base, where Zero revealed his betrayal and joined the fight, and Danzo survived repeated attacks with Izanagi before Naruto forced him to flee through the Iron Coffin Seal.
- Danzo activated the Reverse Four Symbols Seal, but Naruto’s plan delayed it and teleported Danzo away, and Hiruzen then gave Naruto full authority over Root.
- Naruto reorganized Root under a Code of Duty, offered its members a choice to serve or retire, and assigned Kenta Kobayashi to reproduce the Bolter design while Sai began exploring his emotions through drawing.
- Naruto recruited Neji as a long-range marksman, trained him as Cicada Shell, and sent Root to protect Yui and purge suspected foreign spies from Konoha.
- Naruto arranged for the Daimyō’s Palace to appoint Neji as a reserve candidate for the Twelve Guardian Ninja, giving the Hyuga Clan three days to remove his Caged Bird Curse Mark.
- Naruto told Zero that Neji’s appointment was only the beginning of his plan to weaken the Hyuga system and reorganize Konoha into a war fortress.