Arc 3The Uchiha Crisis
Hyuga Makoto gained new power while investigating Obito and the growing conflict between Konoha and the Uchiha. As Itachi began the clan massacre, Makoto confronted Obito, then joined Konoha’s forces at the Clan Head Residence, where Itachi emerged with Susanoo beside his parents’ bodies.
- Makoto fought Obito and Black Zetsu, revealed his knowledge of Chakra’s origins, and gained Black Zetsu’s Yin-Yang Release knowledge after the enemy escaped the Orbital Cannon’s strike.
- Makoto and Konoha’s leaders investigated Obito’s connection to the Nine-Tails Incident and suspected that he had influenced Itachi, while Makoto weakened Neji’s Caged Bird seal and demanded that Neji accept him as his adoptive father.
- Makoto exposed Obito at the cemetery and fought him, using his Byakugan and Karma to counter Kamui before Obito escaped, and Konoha’s leaders began investigating whether the masked man was the supposedly dead Uchiha Obito.
- Makoto absorbed a portion of Obito’s Yin Release, awakened Sacrificial Alchemy, and began developing the Nucleus Organization with Shisui as tensions around the Uchiha grew.
- Fugaku revealed his Mangekyo and the Uchiha coup plan to Itachi, who reported it to Hiruzen and agreed to handle the rebellion, and Obito then agreed to help Itachi eliminate the clan while sparing Sasuke.
- Itachi attacked the Uchiha, but Konoha’s forces had been alerted, and Makoto confronted Obito at the Police Department and entered his Different Space, where an explosion left Obito badly injured, though he survived through Izanagi.
- Makoto arrived as Itachi faced Fugaku and Mikoto, then joined Hiruzen’s order to attack and blasted the Clan Head Residence, and Itachi emerged unharmed with Susanoo active beside his parents’ bodies.