Arc 3Root and New Ties
Itachi and Tenzo seized Root and crushed an Uchiha rebellion while Naruto reunited with his parents, welcomed Karin into his life, and grew closer to Sasuke and his classmates. The arc ended with Itachi leaving for Root after the massacre, as a soul entered his belly.
- Danzo’s Root Base was devastated by Shisui’s Spiral Gun, and Sarutobi later took control of Root while Danzo resisted handing it over.
- Itachi and Tenzo subdued Root’s members and took command, with Itachi using his Mangekyō on Otsu and the others.
- Hashirama helped Naruto and Kurama play cards, then stopped Naruto from opening Kurama’s seal when Minato appeared, and Minato and Kushina later reunited with Naruto in the Sealing Space.
- During a wilderness-survival outing, Sasuke killed a wild boar and Naruto and Sasuke rescued Karin from Pig Big, learning she was Naruto’s cousin.
- Sarutobi arranged for Karin to live near Naruto, and Kakashi brought her to meet him, and Naruto welcomed Karin and took her to school, where she met Sasuke and his classmates.
- Itachi and Tenzo led New Root and ANBU against Uchiha extremists at Naka Shrine, killing nearly one hundred rebels after Fugaku declined to lead a coup.
- Danzo learned that Itachi had taken Root and ordered Otsu to gather the survivors, but Otsu warned that Itachi already knew their locations.
- Itachi showed Uchiha Ye the massacre through Tsukuyomi, challenged the survivors to oppose him or leave, then departed for Root with Tenzo as a soul awakened in the Pure Land and entered his belly.